PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG011300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 206aa    MW: 22812.1 Da    PI: 9.7455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG011300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-123986454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         ++  rE+ RRdr+N++f eL +++ +    ++ Kl+Ka iL  A++ + +L
  Pavir.1NG011300.1.p 39 SKACREKMRRDRLNDRFLELSSVMNPG---KQAKLDKANILSDATRMLAQL 86
                         6789**********************9...9***************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1329102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.5573586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-83891No hitNo description
PfamPF000102.5E-93986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1240108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-84192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSASSILGID GFSVDACGFE QSNLGKRPRD EPSSSGPKSK ACREKMRRDR LNDRFLELSS  60
VMNPGKQAKL DKANILSDAT RMLAQLRGEA EKLKESNEKL RENIKDLKEE KNELREEKVR  120
LKAEKERLEQ QVKAMSAPPT GYVSHVPHPA AYHPAAFAPF VPPQQAPTNK SAPIPAAFPG  180
MAMWQWLPPT VVDTTQDPKL WPPNA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.448160.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0409200.0BT040920.1 Zea mays full-length cDNA clone ZM_BFc0152D09 mRNA, complete cds.
GenBankEU9655850.0EU965585.1 Zea mays clone 287196 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676877.11e-129PREDICTED: uncharacterized protein LOC100274393 isoform X1
SwissprotQ9FH379e-61ILR3_ARATH; Transcription factor ILR3
TrEMBLB6SST81e-129B6SST8_MAIZE; DNA binding protein
STRINGSb04g001200.11e-131(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-44bHLH family protein